http://skepticsannotatedbible.com/
A hyperlinked King James Version of the Bible, annotated and cross-referenced line by line with contradictions and notes of false prophesies, cruelty and violence, homophobia, sexism, and bad science. As you might expect, they'll sometimes respond to a line out of context, but they do so with the excuse that certain fundamentalists often do the same thing to argue their own positions. A good site to bookmark on the computer at the Christian Youth Center.