- Way of The Warrior, Part 1
- Way of The Warrior, Part 2
- The Visitor
When a tragic accident causes Sisko to vanish before his son's eyes, young Jake begins a life-long obsession to bring him back.
- Hippocratic Oath
Held prisoner by a group of rebel Jem'Hadar, Bashir and O'Brien clash over Bashir's desire to help their captors escape Dominion rule.
- Indiscretion
Forced to bring Dukat along on a personal mission, Kira discovers the real reason her nemesis wants to accompany her.
- Rejoined
Jadzia Dax must choose between her feelings and the rules of Trill society when she is reunited with the wife of one of Dax's previous hosts.
- Little Green Men
A mishap sends Quark, Rom, and Nog back in time to Earth of 1947 in Roswell, New Mexico, where military forces mistake them for alien invaders.
- Starship Down
A fierce battle with the Jem'Hadar leaves the Defiant trapped in a planet's volatile atmosphere.
- The Sword of Kahless
Kor, a revered Klingon warrior, sets out with Worf and Dax in search of a mythical, ancient artifact they believe has the power to unite the Klingon Empire.
- Our Man Bashir
Posing as a 1960s secret agent in a malfunctioning holosuite program, Bashir is all that stands between his trapped fellow officers and certain death.
- Homefront
Evidence that Changelings are targeting Earth sends Sisko back to his home planet, where he and Odo must prevent - or prepare for - war with the Dominion.
- Paradise Lost
Preparing Earth for war with the Dominion, Sisko and Odo discover evidence of a Starfleet plot to seize control of the planet from the Federation.
- Crossfire
Odo's hidden feelings for Kira interfere with his duty to protect the Bajoran First Minister -- who also happens to be attracted to her.
- Return to Grace
A demoted Dukat enlists Kira's aid in regaining his former status in the Cardassian Empire.
- The Sons of Mogh
Cast out of Klingon society because of Worf's dishonor, his outcast brother asks Worf to kill him.
- The Bar Association
Tired of workplace mistreatment at the hands of his brother, Rom organizes all of Quark's employees into a union and goes on strike against the bar.
- Accession
A legendary Bajoran appears mysteriously after more than 200 years and challenges Sisko's claim to be the Emissary.
- Rules of Engagement
The Klingon Empire accuses Worf of wantonly destroying a Klingon ship during a battle.
- Hard Time
After an alien race implants false memories of a twenty-year prison sentence into O'Brien's brain, he has trouble readjusting to station life.
- Shattered Mirror
Sisko follows his son into a war-torn alternate universe after Jake is lured there by the living counterpart of his late mother.
- The Muse
While Odo provides shelter for a pregnant Lwaxana Troi, Jake Sisko falls under the spell of a mysterious woman.
- For the Cause
Sisko is shocked to learn that his girlfriend, Kasidy Yates, may be a Maquis smuggler.
- To The Death
Attempting to stop a group of Jem'Hadar renegades from gaining power, Sisko and the Defiant crew must join forces with deadly Jem'Hadar soldiers.
- The Quickening
Bashir tries to save a Gamma Quadrant society afflicted with an incurable, terminal disease by the Jem'Hadar.
- Body Parts
Misdiagnosed with a terminal disease, Quark sells his body parts on the Ferengi market to pay off his debts, then finds himself unable to break the contract.
- Broken Link
Odo is forced to return to the homeworld of his people and face judgment for killing one of his own.